Query GEO and receive gene sets extracted from the returned study
try an example: type 2 diabetes, STAT3 knockout, erythrocyte
RummagenexRummaGEO
Rummage through the top loading
from crossing the gene sets from Rummagene and RummaGEO. Gene set pairs are sorted by the level of overlap
computed with the Fisher's exact test. To create the RummagenexRummaGEO database,
we crossed 748,220 Rummagene sets with 170,612 human RummaGEO sets and 193,939 mouse RummaGEO setsto find the most similar gene sets that match your query.
We used supporting materials from 121,237 PMC articles
scanned by Rummagene and crossed them with gene sets from
13,637 human GEO studies and 15,887 mouse GEO studies extracted by RummaGEO.